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2019/06/15 - Functional Database: Versioned Generic Tuple Store
2019/06/15 - Functional Database: Versioned Generic Tuple Store
Knowledge Base
Reproducible Science
Scheme programming language
Version Control System
Versioning in production systems is a trick everybody knows about whether it is through backup, logging systems and ad-hoc audit trails. It allows to inspect, debug and in worst cases rollback to previous states. There is no need to explain the great importance of versioning in software management as tools like mercurial, git and fossil have shaped modern computing.
Having the power of multiple branch versioning open the door to manyfold applications. It allows to implement a change-request mechanic similar to github's pull requests and gitlab's merge requests in any domains.
The change-request mechanic is explicit about the actual human workflow in entreprise settings in particular when a senior person validates a change by a less senior person.
Versioning tuples in a direct-acyclic-graph make the implementation of such mechanics more systematic and less error prone as the implementation can be shared across various tools and organisations.
Being generic allows downstream applications to fine tune their time-space requirements. By incrementing the number of items in a tuple, it allows to easily represent provenance or licence. Thus, it avoid the need for reification technics as described in Frey:2017 to represent metadata on all tuples.
datae is a software that takes the path of versioning data in a direct-acyclic-graph. It applies the change-request mechanic to cooperation around the making of a knowledge base. It is similar in spirit to wikidata or freebase.
Resource Description Framework (RDF) offers a good canvas for cooperation around open data but there is no solution that is good enough according to Canova:2015. The use of a version control system to store open data is a good thing as it draws a clear path for reproducible science.
In projects like datahub.io or db.nomics, datae aims to replace the use of git.
datae can make practical cooperation around the creation, publication, storage, re-use and maintenance of knowledge base that is possibly bigger than memory.
datae use a novel approach to store tuples that is similar in principle to OSTRICH Ruben:2018 in a key-value store. datae use WiredTiger database storage engine to deliver a pragmatic versatile ACID-compliant versioned generic tuple store.
datae only stores changes between versions. To resolve conflicts, merge commits must copy some changes. datae does not rely on the theory of patches introduced by Darcs Tallinn:2005.
Current status, and plans for the future
This is stil a work-in-progress. You can find the code at source hut.